Variant report

Variant	rs59150919
Chromosome Location	chr4:129280584-129280585
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:129280207..129282778-chr4:129300423..129303130,2	MCF-7	breast:
2	chr4:129209415..129211444-chr4:129279125..129281876,2	MCF-7	breast:
3	chr4:129278687..129281100-chr4:129282894..129286153,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164040	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17013164	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17013198	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34613566	0.82[EUR][1000 genomes]
rs60668559	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61587462	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6850541	0.82[EUR][1000 genomes]
rs72928249	0.82[EUR][1000 genomes]
rs72928256	0.82[EUR][1000 genomes]
rs7655151	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7655383	0.82[EUR][1000 genomes]
rs7679029	0.88[ASN][1000 genomes]
rs7694151	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7694390	0.82[EUR][1000 genomes]
rs7698342	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:129270600-129291800	Weak transcription	Aorta	Aorta
2	chr4:129271200-129281200	Enhancers	Placenta	Placenta
3	chr4:129274600-129281600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr4:129274800-129283200	Enhancers	Fetal Heart	heart
5	chr4:129275800-129283800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr4:129278000-129280600	Enhancers	A549	lung
7	chr4:129278200-129280600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr4:129278200-129280800	Enhancers	NHLF	lung
9	chr4:129278200-129281000	Enhancers	Fetal Muscle Leg	muscle
10	chr4:129278200-129281000	Enhancers	HSMMtube	muscle
11	chr4:129278400-129282800	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr4:129279200-129280600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr4:129279400-129280600	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr4:129279800-129281000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr4:129280200-129280600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr4:129280200-129280800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr4:129280200-129280800	Enhancers	NHDF-Ad	bronchial
18	chr4:129280200-129281000	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr4:129280200-129281200	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr4:129280200-129282600	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr4:129280200-129282600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr4:129280400-129282400	Weak transcription	Osteobl	bone
23	chr4:129280400-129290400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links