Variant report

Variant	rs7655383
Chromosome Location	chr4:129362028-129362029
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17013164	0.82[EUR][1000 genomes]
rs34613566	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59150919	0.82[EUR][1000 genomes]
rs60668559	0.82[EUR][1000 genomes]
rs6850541	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72928249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72928256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7694151	0.82[EUR][1000 genomes]
rs7694390	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7698342	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:129358600-129363600	Weak transcription	Gastric	stomach
2	chr4:129361200-129362800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:129361200-129363800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr4:129362000-129362200	ZNF genes & repeats	Left Ventricle	heart
5	chr4:129362000-129362600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:129362000-129362600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr4:129362000-129362600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
8	chr4:129362000-129362600	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr4:129362000-129362600	ZNF genes & repeats	Pancreas	Pancrea
10	chr4:129362000-129362600	Strong transcription	A549	lung
11	chr4:129362000-129362800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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