Variant report

Variant	rs60668559
Chromosome Location	chr4:129290779-129290780
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17013164	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17013198	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34613566	0.82[EUR][1000 genomes]
rs59150919	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61587462	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6850541	0.82[EUR][1000 genomes]
rs72928249	0.82[EUR][1000 genomes]
rs72928256	0.82[EUR][1000 genomes]
rs7655151	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7655383	0.82[EUR][1000 genomes]
rs7679029	0.88[ASN][1000 genomes]
rs7694151	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7694390	0.82[EUR][1000 genomes]
rs7698342	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:129270600-129291800	Weak transcription	Aorta	Aorta
2	chr4:129283200-129291600	Weak transcription	Fetal Heart	heart
3	chr4:129283200-129292000	Weak transcription	Osteobl	bone
4	chr4:129283400-129291600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:129288600-129290800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:129290200-129290800	ZNF genes & repeats	Fetal Intestine Small	intestine
7	chr4:129290600-129297600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr4:129290600-129297600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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