Variant report

Variant	rs17016755
Chromosome Location	chr4:143683303-143683304
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:143682400..143684805-chr4:143686793..143689462,3	K562	blood:

Variant related genes	Relation type
ENSG00000109452	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11100757	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11100758	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11100759	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12499329	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12500163	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12502865	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12502867	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12504681	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12507170	1.00[ASN][1000 genomes]
rs12507570	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12507620	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12508023	1.00[EUR][1000 genomes]
rs12509337	1.00[ASN][1000 genomes]
rs12509521	1.00[ASN][1000 genomes]
rs12510307	1.00[ASN][1000 genomes]
rs17016749	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17016776	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28633136	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55657725	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55862660	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55942956	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56207111	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57356511	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57908294	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6814777	0.97[AFR][1000 genomes]
rs6831728	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7670737	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7689139	1.00[JPT][hapmap];0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7697637	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830101	chr4:143518810-143684392	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv595606	chr4:143631691-143729595	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv880174	chr4:143639498-143848024	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143672600-143698400	Weak transcription	Aorta	Aorta
2	chr4:143675400-143688400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr4:143675600-143683600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr4:143683000-143684000	Strong transcription	Primary hematopoietic stem cells	blood
5	chr4:143683000-143684200	Enhancers	Fetal Heart	heart
6	chr4:143683200-143683800	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr4:143683200-143684200	Enhancers	Left Ventricle	heart
8	chr4:143683200-143684200	Enhancers	Psoas Muscle	Psoas

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