Variant report

Variant	rs12509337
Chromosome Location	chr4:143723381-143723382
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11100757	1.00[ASN][1000 genomes]
rs11100758	0.86[ASN][1000 genomes]
rs11100759	1.00[ASN][1000 genomes]
rs12498497	0.88[EUR][1000 genomes]
rs12498666	1.00[EUR][1000 genomes]
rs12498873	0.85[EUR][1000 genomes]
rs12499329	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12500163	1.00[JPT][hapmap]
rs12500808	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12501558	0.89[EUR][1000 genomes]
rs12502865	1.00[ASN][1000 genomes]
rs12502867	1.00[ASN][1000 genomes]
rs12502920	0.94[EUR][1000 genomes]
rs12504420	1.00[EUR][1000 genomes]
rs12504681	1.00[ASN][1000 genomes]
rs12506296	1.00[EUR][1000 genomes]
rs12507170	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12507570	1.00[ASN][1000 genomes]
rs12507620	1.00[ASN][1000 genomes]
rs12509521	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12510307	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17016749	1.00[ASN][1000 genomes]
rs17016755	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17016776	1.00[ASN][1000 genomes]
rs2053574	1.00[EUR][1000 genomes]
rs2289792	1.00[EUR][1000 genomes]
rs2289793	1.00[EUR][1000 genomes]
rs28633136	1.00[ASN][1000 genomes]
rs55657725	1.00[ASN][1000 genomes]
rs55862660	1.00[ASN][1000 genomes]
rs55942956	1.00[ASN][1000 genomes]
rs56207111	1.00[ASN][1000 genomes]
rs57356511	1.00[ASN][1000 genomes]
rs57908294	1.00[ASN][1000 genomes]
rs58027630	0.94[EUR][1000 genomes]
rs6831728	1.00[ASN][1000 genomes]
rs7670737	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7689139	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7697637	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv595606	chr4:143631691-143729595	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv880174	chr4:143639498-143848024	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143698800-143738600	Weak transcription	Aorta	Aorta
2	chr4:143709200-143732200	Weak transcription	Left Ventricle	heart
3	chr4:143718600-143736600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr4:143720200-143733200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr4:143722000-143724000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr4:143722200-143724000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr4:143722600-143723600	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr4:143722600-143723600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr4:143722600-143723800	Enhancers	NHEK	skin
10	chr4:143722600-143724000	Enhancers	HMEC	breast
11	chr4:143723000-143723400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr4:143723000-143723400	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr4:143723000-143723600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr4:143723000-143724000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr4:143723200-143723600	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr4:143723200-143723600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr4:143723200-143723800	Enhancers	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links