Variant report

Variant	rs12502920
Chromosome Location	chr4:143610030-143610031
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12498497	0.83[EUR][1000 genomes]
rs12498666	0.94[EUR][1000 genomes]
rs12498873	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12499329	1.00[CHD][hapmap];0.85[TSI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12500808	0.94[EUR][1000 genomes]
rs12501558	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12504420	0.94[EUR][1000 genomes]
rs12506296	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12507170	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12509337	0.94[EUR][1000 genomes]
rs12509521	0.94[EUR][1000 genomes]
rs12510307	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17016755	1.00[CHD][hapmap]
rs2053574	0.94[EUR][1000 genomes]
rs2289792	0.94[EUR][1000 genomes]
rs2289793	0.94[EUR][1000 genomes]
rs58027630	0.89[EUR][1000 genomes]
rs7670737	1.00[CHD][hapmap];0.85[TSI][hapmap];0.94[EUR][1000 genomes]
rs7697637	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830101	chr4:143518810-143684392	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143585600-143613000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:143607200-143612000	Enhancers	Fetal Heart	heart
3	chr4:143607600-143611800	Weak transcription	Left Ventricle	heart
4	chr4:143607800-143611000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr4:143607800-143611000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr4:143607800-143611800	Weak transcription	Dnd41	blood
7	chr4:143607800-143613600	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr4:143608200-143611600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr4:143609000-143610200	Enhancers	Thymus	Thymus
10	chr4:143609200-143615800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr4:143609800-143613800	Weak transcription	Primary T helper cells PMA-I stimulated	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links