Variant report

Variant	rs12510307
Chromosome Location	chr4:143693973-143693974
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11100757	1.00[ASN][1000 genomes]
rs11100758	0.86[ASN][1000 genomes]
rs11100759	1.00[ASN][1000 genomes]
rs12498497	0.88[EUR][1000 genomes]
rs12498666	1.00[EUR][1000 genomes]
rs12498873	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12499329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12500808	1.00[EUR][1000 genomes]
rs12501558	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12502865	1.00[ASN][1000 genomes]
rs12502867	1.00[ASN][1000 genomes]
rs12502920	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12504420	1.00[EUR][1000 genomes]
rs12504681	1.00[ASN][1000 genomes]
rs12506296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12507170	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12507570	1.00[ASN][1000 genomes]
rs12507620	1.00[ASN][1000 genomes]
rs12509337	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12509521	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17016749	1.00[ASN][1000 genomes]
rs17016755	1.00[ASN][1000 genomes]
rs17016776	1.00[ASN][1000 genomes]
rs2053574	1.00[EUR][1000 genomes]
rs2289792	1.00[EUR][1000 genomes]
rs2289793	1.00[EUR][1000 genomes]
rs28633136	1.00[ASN][1000 genomes]
rs55657725	1.00[ASN][1000 genomes]
rs55862660	1.00[ASN][1000 genomes]
rs55942956	1.00[ASN][1000 genomes]
rs56207111	1.00[ASN][1000 genomes]
rs57356511	1.00[ASN][1000 genomes]
rs57908294	1.00[ASN][1000 genomes]
rs58027630	0.94[EUR][1000 genomes]
rs6831728	1.00[ASN][1000 genomes]
rs7670737	1.00[EUR][1000 genomes]
rs7689139	1.00[ASN][1000 genomes]
rs7697637	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv595606	chr4:143631691-143729595	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv880174	chr4:143639498-143848024	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143672600-143698400	Weak transcription	Aorta	Aorta
2	chr4:143684000-143697400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr4:143684200-143706000	Weak transcription	Fetal Heart	heart
4	chr4:143689200-143697200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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