Variant report

Variant	rs17017208
Chromosome Location	chr1:211278358-211278359
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1338348	0.92[CHB][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs17017167	1.00[CHB][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs17017172	1.00[CHB][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs17017197	1.00[CHB][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs17017204	1.00[CHB][hapmap];0.86[JPT][hapmap];0.94[ASN][1000 genomes]
rs4072437	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4951500	0.89[ASN][1000 genomes]
rs4951501	1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs4951503	1.00[CHB][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs4951714	1.00[CHB][hapmap]
rs4951715	0.80[ASN][1000 genomes]
rs4951717	0.90[ASN][1000 genomes]
rs6671566	1.00[CEU][hapmap]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211256400-211285400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:211256800-211282400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr1:211266400-211280200	Weak transcription	Pancreas	Pancrea
4	chr1:211269800-211278600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:211271400-211286000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr1:211273200-211281200	Weak transcription	A549	lung
7	chr1:211273200-211282400	Strong transcription	HSMM	muscle
8	chr1:211276600-211278400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr1:211276800-211278800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr1:211277600-211280200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr1:211277800-211278400	Genic enhancers	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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