Variant report

Variant	rs17023271
Chromosome Location	chr4:96136585-96136586
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:96130668..96133159-chr4:96135795..96137736,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16996454	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17023280	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17023283	1.00[AMR][1000 genomes]
rs17023289	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17023302	1.00[AMR][1000 genomes]
rs17023315	1.00[AMR][1000 genomes]
rs56213435	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56952424	1.00[AMR][1000 genomes]
rs60269430	1.00[AMR][1000 genomes]
rs72881231	1.00[AMR][1000 genomes]
rs73837511	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73837513	1.00[AMR][1000 genomes]
rs73837514	1.00[AMR][1000 genomes]
rs73839929	1.00[AMR][1000 genomes]
rs7674572	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv594907	chr4:95975470-96170439	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv879623	chr4:96123466-96168719	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96100000-96143000	Weak transcription	Fetal Kidney	kidney
2	chr4:96126000-96137000	Weak transcription	Ovary	ovary
3	chr4:96133800-96136800	Enhancers	Brain Substantia Nigra	brain
4	chr4:96134200-96136600	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr4:96134200-96136800	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr4:96134400-96136600	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr4:96134400-96142600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr4:96134600-96138200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr4:96134600-96138600	Enhancers	K562	blood
10	chr4:96134600-96176800	Weak transcription	Fetal Stomach	stomach
11	chr4:96134800-96137000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr4:96134800-96137600	Enhancers	Brain Germinal Matrix	brain
13	chr4:96134800-96137800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr4:96134800-96138000	Weak transcription	Aorta	Aorta
15	chr4:96134800-96140200	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr4:96134800-96147000	Weak transcription	Brain Anterior Caudate	brain
17	chr4:96135000-96137000	Weak transcription	HSMMtube	muscle
18	chr4:96135200-96146800	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr4:96135400-96138400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr4:96135600-96136800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr4:96135600-96153600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr4:96135800-96136800	Weak transcription	Brain Hippocampus Middle	brain
23	chr4:96135800-96136800	Weak transcription	Fetal Lung	lung
24	chr4:96135800-96136800	Weak transcription	Osteobl	bone
25	chr4:96135800-96137000	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr4:96135800-96140000	Weak transcription	Brain Angular Gyrus	brain
27	chr4:96135800-96140000	Weak transcription	Brain Cingulate Gyrus	brain
28	chr4:96136200-96136600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr4:96136200-96136600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr4:96136200-96138200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr4:96136200-96138200	Enhancers	Muscle Satellite Cultured Cells	--
32	chr4:96136400-96137200	Strong transcription	Fetal Brain Male	brain
33	chr4:96136400-96138000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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