Variant report

Variant	rs73837514
Chromosome Location	chr4:96176945-96176946
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:96170637..96175521-chr4:96175696..96180371,8	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16996454	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17023271	1.00[AMR][1000 genomes]
rs17023280	1.00[AMR][1000 genomes]
rs17023283	1.00[AMR][1000 genomes]
rs17023289	1.00[AMR][1000 genomes]
rs17023302	1.00[AMR][1000 genomes]
rs17023315	1.00[AMR][1000 genomes]
rs56213435	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56952424	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60269430	1.00[AMR][1000 genomes]
rs72881231	1.00[AMR][1000 genomes]
rs73837511	1.00[AMR][1000 genomes]
rs73837513	1.00[AMR][1000 genomes]
rs73839929	1.00[AMR][1000 genomes]
rs7674572	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv879624	chr4:96147860-96183532	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv879625	chr4:96147860-96189813	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96153200-96189600	Weak transcription	Fetal Kidney	kidney
2	chr4:96163800-96177200	Weak transcription	Aorta	Aorta
3	chr4:96164000-96177000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr4:96166400-96177200	Weak transcription	Left Ventricle	heart
5	chr4:96171400-96184600	Weak transcription	Fetal Lung	lung
6	chr4:96171600-96181600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr4:96171800-96187600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr4:96172000-96177800	Enhancers	Brain Hippocampus Middle	brain
9	chr4:96172200-96177000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr4:96174800-96177800	Enhancers	Brain Cingulate Gyrus	brain
11	chr4:96175800-96177000	Enhancers	Brain Substantia Nigra	brain
12	chr4:96176600-96177000	Enhancers	Brain Angular Gyrus	brain
13	chr4:96176600-96177000	Enhancers	NH-A	brain
14	chr4:96176600-96177600	Enhancers	HSMM	muscle
15	chr4:96176600-96177600	Enhancers	HSMMtube	muscle
16	chr4:96176600-96177800	Flanking Active TSS	K562	blood
17	chr4:96176600-96178200	Enhancers	HUVEC	blood vessel
18	chr4:96176800-96177000	Active TSS	Brain Anterior Caudate	brain
19	chr4:96176800-96177000	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr4:96176800-96177000	Enhancers	Fetal Stomach	stomach
21	chr4:96176800-96177000	Enhancers	Ovary	ovary
22	chr4:96176800-96177200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr4:96176800-96177200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr4:96176800-96177600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr4:96176800-96177600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr4:96176800-96177600	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr4:96176800-96177600	Flanking Active TSS	Osteobl	bone
28	chr4:96176800-96177800	Enhancers	Muscle Satellite Cultured Cells	--

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