Variant report

Variant	rs56952424
Chromosome Location	chr4:96174172-96174173
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16996454	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17023271	1.00[AMR][1000 genomes]
rs17023280	1.00[AMR][1000 genomes]
rs17023283	1.00[AMR][1000 genomes]
rs17023289	1.00[AMR][1000 genomes]
rs17023302	1.00[AMR][1000 genomes]
rs17023315	1.00[AMR][1000 genomes]
rs56213435	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60269430	1.00[AMR][1000 genomes]
rs72881231	1.00[AMR][1000 genomes]
rs73837511	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73837513	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73837514	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839929	1.00[AMR][1000 genomes]
rs7674572	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv879624	chr4:96147860-96183532	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv879625	chr4:96147860-96189813	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96134600-96176800	Weak transcription	Fetal Stomach	stomach
2	chr4:96153200-96189600	Weak transcription	Fetal Kidney	kidney
3	chr4:96154600-96176800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr4:96162000-96176800	Weak transcription	Brain Anterior Caudate	brain
5	chr4:96163800-96177200	Weak transcription	Aorta	Aorta
6	chr4:96164000-96177000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr4:96166400-96177200	Weak transcription	Left Ventricle	heart
8	chr4:96171200-96176800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr4:96171400-96184600	Weak transcription	Fetal Lung	lung
10	chr4:96171600-96181600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr4:96171800-96187600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr4:96172000-96177800	Enhancers	Brain Hippocampus Middle	brain
13	chr4:96172200-96176600	Weak transcription	Brain Angular Gyrus	brain
14	chr4:96172200-96177000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr4:96172600-96174800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr4:96173000-96175600	Weak transcription	K562	blood
17	chr4:96173000-96175800	Weak transcription	Brain Substantia Nigra	brain
18	chr4:96173000-96176600	Weak transcription	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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