Variant report

Variant	rs17023315
Chromosome Location	chr4:96161231-96161232
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16996454	1.00[AMR][1000 genomes]
rs17023271	1.00[AMR][1000 genomes]
rs17023280	1.00[AMR][1000 genomes]
rs17023283	0.89[YRI][hapmap];1.00[AMR][1000 genomes]
rs17023289	1.00[AMR][1000 genomes]
rs17023302	1.00[AMR][1000 genomes]
rs56213435	1.00[AMR][1000 genomes]
rs56952424	1.00[AMR][1000 genomes]
rs60269430	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72881231	1.00[AMR][1000 genomes]
rs73837511	1.00[AMR][1000 genomes]
rs73837513	1.00[AMR][1000 genomes]
rs73837514	1.00[AMR][1000 genomes]
rs73839929	1.00[AMR][1000 genomes]
rs7674572	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv594907	chr4:95975470-96170439	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv879623	chr4:96123466-96168719	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv879624	chr4:96147860-96183532	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv879625	chr4:96147860-96189813	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv822655	chr4:96160867-96161545	Enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96134600-96176800	Weak transcription	Fetal Stomach	stomach
2	chr4:96140600-96163400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:96141600-96163200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr4:96147800-96163600	Weak transcription	Aorta	Aorta
5	chr4:96153200-96189600	Weak transcription	Fetal Kidney	kidney
6	chr4:96153800-96163200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr4:96154400-96163400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr4:96154400-96166200	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr4:96154600-96161800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr4:96154600-96172000	Weak transcription	Brain Substantia Nigra	brain
11	chr4:96154600-96176800	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr4:96156600-96166200	Weak transcription	Left Ventricle	heart
13	chr4:96159400-96161800	Strong transcription	Fetal Lung	lung
14	chr4:96160400-96169400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr4:96160600-96161400	Weak transcription	Brain Hippocampus Middle	brain
16	chr4:96160800-96163200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr4:96160800-96164200	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
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