Variant report

Variant	rs17023784
Chromosome Location	chr2:100847207-100847208
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:100839805..100842512-chr2:100845176..100847981,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10166685	1.00[AMR][1000 genomes]
rs10195002	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10197691	1.00[AMR][1000 genomes]
rs11885543	1.00[AMR][1000 genomes]
rs12328904	1.00[AMR][1000 genomes]
rs13392606	1.00[AMR][1000 genomes]
rs13397862	1.00[AMR][1000 genomes]
rs13399298	1.00[AMR][1000 genomes]
rs13399343	1.00[AMR][1000 genomes]
rs13400243	1.00[AMR][1000 genomes]
rs13400704	1.00[AMR][1000 genomes]
rs13416518	1.00[AMR][1000 genomes]
rs13427006	1.00[AMR][1000 genomes]
rs13429281	1.00[AMR][1000 genomes]
rs17023787	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17023795	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17023813	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17023822	1.00[ASW][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17023879	1.00[AMR][1000 genomes]
rs28529291	1.00[AMR][1000 genomes]
rs57419659	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6707671	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6708691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7583182	1.00[AMR][1000 genomes]
rs7586717	1.00[AMR][1000 genomes]
rs7601715	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003343	chr2:100241560-100848900	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv535843	chr2:100241560-100848900	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1007777	chr2:100816913-101308914	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
4	nsv535844	chr2:100816913-101308914	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
5	nsv834311	chr2:100816917-100990036	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100844200-100851400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr2:100847000-100847600	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr2:100847000-100847600	Enhancers	Fetal Heart	heart
4	chr2:100847200-100847400	Enhancers	Lung	lung
5	chr2:100847200-100847600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr2:100847200-100847600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr2:100847200-100847800	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links