Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:100862709..100864257-chr2:100871262..100872901,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10166685	1.00[AMR][1000 genomes]
rs10195002	1.00[AMR][1000 genomes]
rs10197691	1.00[AMR][1000 genomes]
rs11885543	1.00[AMR][1000 genomes]
rs12328904	1.00[AMR][1000 genomes]
rs13392606	1.00[AMR][1000 genomes]
rs13397862	1.00[AMR][1000 genomes]
rs13399298	1.00[AMR][1000 genomes]
rs13399343	1.00[AMR][1000 genomes]
rs13400243	1.00[AMR][1000 genomes]
rs13400704	1.00[AMR][1000 genomes]
rs13416518	1.00[AMR][1000 genomes]
rs13427006	1.00[AMR][1000 genomes]
rs13429281	1.00[AMR][1000 genomes]
rs17023784	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17023787	1.00[AMR][1000 genomes]
rs17023795	1.00[AMR][1000 genomes]
rs17023813	1.00[AMR][1000 genomes]
rs17023822	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17023879	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs28529291	1.00[AMR][1000 genomes]
rs57419659	1.00[AMR][1000 genomes]
rs6708691	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7583182	1.00[AMR][1000 genomes]
rs7586717	1.00[AMR][1000 genomes]
rs7601715	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007777	chr2:100816913-101308914	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv535844	chr2:100816913-101308914	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv834311	chr2:100816917-100990036	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100855200-100865600	Weak transcription	Thymus	Thymus
2	chr2:100858400-100867800	Enhancers	Primary B cells from cord blood	blood
3	chr2:100858600-100863000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr2:100859400-100863000	Weak transcription	Right Ventricle	heart
5	chr2:100859400-100863600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr2:100859800-100864000	Weak transcription	Fetal Thymus	thymus
7	chr2:100859800-100869600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr2:100861200-100863000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr2:100861600-100863000	Enhancers	NH-A	brain
10	chr2:100862400-100864400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr2:100862800-100863200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
12	chr2:100862800-100863200	Enhancers	Fetal Lung	lung
13	chr2:100862800-100863800	Enhancers	Fetal Brain Male	brain
14	chr2:100862800-100864000	Enhancers	Spleen	Spleen
15	chr2:100862800-100864200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr2:100862800-100865800	Enhancers	GM12878-XiMat	blood

Quick Search: