Variant report

Variant	rs57419659
Chromosome Location	chr2:100850296-100850297
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10166685	1.00[AMR][1000 genomes]
rs10195002	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10197691	1.00[AMR][1000 genomes]
rs11885543	1.00[AMR][1000 genomes]
rs12328904	1.00[AMR][1000 genomes]
rs13392606	1.00[AMR][1000 genomes]
rs13397862	1.00[AMR][1000 genomes]
rs13399298	1.00[AMR][1000 genomes]
rs13399343	1.00[AMR][1000 genomes]
rs13400243	1.00[AMR][1000 genomes]
rs13400704	1.00[AMR][1000 genomes]
rs13416518	1.00[AMR][1000 genomes]
rs13427006	1.00[AMR][1000 genomes]
rs13429281	1.00[AMR][1000 genomes]
rs17023784	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17023787	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17023795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17023813	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17023822	1.00[AMR][1000 genomes]
rs17023879	1.00[AMR][1000 genomes]
rs28529291	1.00[AMR][1000 genomes]
rs6707671	1.00[AMR][1000 genomes]
rs6708691	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7583182	1.00[AMR][1000 genomes]
rs7586717	1.00[AMR][1000 genomes]
rs7601715	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007777	chr2:100816913-101308914	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv535844	chr2:100816913-101308914	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv834311	chr2:100816917-100990036	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100844200-100851400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr2:100847400-100851600	Weak transcription	Lung	lung
3	chr2:100847600-100850600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr2:100848400-100850600	Weak transcription	Fetal Lung	lung
5	chr2:100849400-100856000	Enhancers	Primary B cells from peripheral blood	blood
6	chr2:100849600-100850800	Weak transcription	Primary B cells from cord blood	blood
7	chr2:100850000-100851200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr2:100850000-100853400	Weak transcription	Fetal Heart	heart
9	chr2:100850200-100851400	Enhancers	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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