Variant report

Variant	rs7601715
Chromosome Location	chr2:100661706-100661707
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10195002	1.00[AMR][1000 genomes]
rs10197691	1.00[AMR][1000 genomes]
rs10199628	1.00[ASN][1000 genomes]
rs11891106	1.00[AMR][1000 genomes]
rs12328904	1.00[AMR][1000 genomes]
rs13397862	1.00[AMR][1000 genomes]
rs13399343	1.00[AMR][1000 genomes]
rs13400704	1.00[AMR][1000 genomes]
rs13429281	1.00[AMR][1000 genomes]
rs17023512	1.00[ASN][1000 genomes]
rs17023563	1.00[ASN][1000 genomes]
rs17023571	1.00[ASN][1000 genomes]
rs17023655	1.00[ASN][1000 genomes]
rs17023784	1.00[AMR][1000 genomes]
rs17023787	1.00[AMR][1000 genomes]
rs17023795	1.00[AMR][1000 genomes]
rs17023813	1.00[AMR][1000 genomes]
rs17023822	1.00[AMR][1000 genomes]
rs28529291	1.00[AMR][1000 genomes]
rs56993260	1.00[ASN][1000 genomes]
rs57419659	1.00[AMR][1000 genomes]
rs62148113	1.00[ASN][1000 genomes]
rs62148114	1.00[ASN][1000 genomes]
rs62149354	1.00[ASN][1000 genomes]
rs62150260	1.00[ASN][1000 genomes]
rs62150261	1.00[ASN][1000 genomes]
rs62150270	1.00[ASN][1000 genomes]
rs62150271	1.00[ASN][1000 genomes]
rs62150274	1.00[ASN][1000 genomes]
rs62150289	1.00[ASN][1000 genomes]
rs6707671	1.00[AMR][1000 genomes]
rs6708691	1.00[AMR][1000 genomes]
rs6734477	1.00[AMR][1000 genomes]
rs6743817	1.00[ASN][1000 genomes]
rs6745099	1.00[ASN][1000 genomes]
rs6745784	1.00[AMR][1000 genomes]
rs6748652	1.00[ASN][1000 genomes]
rs72819176	1.00[ASN][1000 genomes]
rs72819179	1.00[ASN][1000 genomes]
rs7583182	1.00[AMR][1000 genomes]
rs7586717	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003343	chr2:100241560-100848900	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv535843	chr2:100241560-100848900	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100644600-100668400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr2:100646400-100662600	Weak transcription	Gastric	stomach
3	chr2:100648200-100666800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr2:100653200-100667200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr2:100654800-100668200	Weak transcription	Thymus	Thymus
6	chr2:100655800-100661800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr2:100656400-100680000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr2:100656600-100686600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr2:100656800-100662800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr2:100657200-100661800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr2:100657800-100664400	Enhancers	Fetal Brain Male	brain
12	chr2:100658200-100662600	Weak transcription	Fetal Lung	lung
13	chr2:100658800-100668400	Weak transcription	Brain Germinal Matrix	brain
14	chr2:100659000-100661800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr2:100659400-100680000	Weak transcription	Stomach Smooth Muscle	stomach
16	chr2:100659600-100666000	Strong transcription	Primary B cells from cord blood	blood
17	chr2:100659800-100671600	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr2:100660000-100669000	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr2:100660200-100661800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr2:100660600-100662400	Strong transcription	Primary B cells from peripheral blood	blood
21	chr2:100660600-100678200	Weak transcription	Fetal Muscle Leg	muscle
22	chr2:100660800-100668800	Weak transcription	Lung	lung
23	chr2:100661000-100663000	Enhancers	Fetal Heart	heart
24	chr2:100661200-100662800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr2:100661400-100662400	Weak transcription	Primary T cells from cord blood	blood
26	chr2:100661600-100662000	Weak transcription	Ovary	ovary
27	chr2:100661600-100662800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr2:100661600-100668800	Weak transcription	Fetal Brain Female	brain

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