Variant report

Variant	rs62150274
Chromosome Location	chr2:100760810-100760811
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10177007	0.89[EUR][1000 genomes]
rs10199628	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17023512	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17023516	0.88[EUR][1000 genomes]
rs17023563	1.00[ASN][1000 genomes]
rs17023571	1.00[ASN][1000 genomes]
rs17023655	1.00[ASN][1000 genomes]
rs56993260	1.00[ASN][1000 genomes]
rs62148113	1.00[ASN][1000 genomes]
rs62148114	1.00[ASN][1000 genomes]
rs62148119	1.00[ASN][1000 genomes]
rs62149343	0.81[EUR][1000 genomes]
rs62149354	1.00[ASN][1000 genomes]
rs62150260	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62150261	1.00[ASN][1000 genomes]
rs62150270	1.00[ASN][1000 genomes]
rs62150271	1.00[ASN][1000 genomes]
rs62150289	1.00[ASN][1000 genomes]
rs6743817	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6745099	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6748652	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72819176	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72819177	0.88[EUR][1000 genomes]
rs72819179	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72819180	0.89[EUR][1000 genomes]
rs72819181	0.91[EUR][1000 genomes]
rs7601715	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003343	chr2:100241560-100848900	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv535843	chr2:100241560-100848900	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv582530	chr2:100739970-100774287	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv527481	chr2:100753490-100763006	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100746200-100764800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:100758200-100761600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr2:100758800-100765600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr2:100759000-100763000	Weak transcription	Adipose Nuclei	Adipose
5	chr2:100759200-100761400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr2:100759200-100763400	Enhancers	Primary B cells from peripheral blood	blood
7	chr2:100759600-100761400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr2:100759800-100761000	Weak transcription	Spleen	Spleen
9	chr2:100759800-100761400	Enhancers	Dnd41	blood
10	chr2:100759800-100762000	Enhancers	Primary B cells from cord blood	blood
11	chr2:100760000-100761200	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr2:100760000-100761400	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr2:100760000-100765400	Weak transcription	Thymus	Thymus
14	chr2:100760600-100761400	Weak transcription	Primary hematopoietic stem cells	blood
15	chr2:100760800-100761400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr2:100760800-100761400	Enhancers	Fetal Thymus	thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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