Variant report

Variant	rs62149354
Chromosome Location	chr2:100730582-100730583
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:100729149..100730802-chr2:100730864..100732886,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10199628	1.00[ASN][1000 genomes]
rs17023512	1.00[ASN][1000 genomes]
rs17023563	1.00[ASN][1000 genomes]
rs17023571	1.00[ASN][1000 genomes]
rs17023655	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17023710	1.00[AMR][1000 genomes]
rs56993260	1.00[ASN][1000 genomes]
rs62148077	1.00[AMR][1000 genomes]
rs62148078	1.00[AMR][1000 genomes]
rs62148079	1.00[AMR][1000 genomes]
rs62148080	1.00[AMR][1000 genomes]
rs62148082	1.00[AMR][1000 genomes]
rs62148084	1.00[AMR][1000 genomes]
rs62148113	1.00[ASN][1000 genomes]
rs62148114	1.00[ASN][1000 genomes]
rs62148119	1.00[ASN][1000 genomes]
rs62150260	1.00[ASN][1000 genomes]
rs62150261	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62150270	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62150271	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62150274	1.00[ASN][1000 genomes]
rs62150289	1.00[ASN][1000 genomes]
rs6743817	1.00[ASN][1000 genomes]
rs6745099	1.00[ASN][1000 genomes]
rs6748652	1.00[ASN][1000 genomes]
rs72819176	1.00[ASN][1000 genomes]
rs72819179	1.00[ASN][1000 genomes]
rs7601715	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003343	chr2:100241560-100848900	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv535843	chr2:100241560-100848900	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv458707	chr2:100687778-100753490	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv582529	chr2:100687778-100753490	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100727200-100730600	Genic enhancers	Primary B cells from peripheral blood	blood
2	chr2:100727600-100730600	Enhancers	Primary T cells from cord blood	blood
3	chr2:100728600-100731800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr2:100728800-100732000	Enhancers	Fetal Thymus	thymus
5	chr2:100729200-100731800	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr2:100729400-100731800	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr2:100729400-100732000	Enhancers	Thymus	Thymus
8	chr2:100729600-100731400	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr2:100729600-100731800	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr2:100729600-100731800	Enhancers	GM12878-XiMat	blood
11	chr2:100729600-100732000	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr2:100729800-100732000	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr2:100730000-100730800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr2:100730000-100730800	Enhancers	Spleen	Spleen
15	chr2:100730000-100731400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr2:100730000-100731800	Enhancers	Primary T cells fromperipheralblood	blood
17	chr2:100730000-100731800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr2:100730000-100732000	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr2:100730200-100730600	Genic enhancers	Primary B cells from cord blood	blood
20	chr2:100730200-100731000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr2:100730200-100742200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr2:100730400-100731000	Enhancers	Fetal Muscle Leg	muscle
23	chr2:100730400-100732000	Enhancers	Primary hematopoietic stem cells	blood
24	chr2:100730400-100732600	Enhancers	Dnd41	blood

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