Variant report

Variant	rs62148077
Chromosome Location	chr2:100809219-100809220
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:100801656..100803685-chr2:100807811..100809953,2	MCF-7	breast:
2	chr2:100799651..100801761-chr2:100808694..100811483,3	MCF-7	breast:
3	chr2:100802266..100804916-chr2:100808443..100810252,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs17023655	1.00[AMR][1000 genomes]
rs17023659	1.00[ASN][1000 genomes]
rs17023710	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17023791	0.87[ASN][1000 genomes]
rs17023801	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17023820	0.87[ASN][1000 genomes]
rs17023833	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62148078	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62148079	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62148080	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62148082	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62148083	1.00[ASN][1000 genomes]
rs62148084	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62148085	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62148086	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62148087	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62148088	1.00[ASN][1000 genomes]
rs62148089	1.00[ASN][1000 genomes]
rs62148090	1.00[ASN][1000 genomes]
rs62148092	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62148093	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62148094	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62148095	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62149354	1.00[AMR][1000 genomes]
rs62150261	1.00[AMR][1000 genomes]
rs62150270	1.00[AMR][1000 genomes]
rs62150271	1.00[AMR][1000 genomes]
rs62150291	1.00[ASN][1000 genomes]
rs6735369	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003343	chr2:100241560-100848900	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv535843	chr2:100241560-100848900	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100800000-100810200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:100800000-100814000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr2:100801800-100813600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr2:100806200-100814200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr2:100806600-100809600	Weak transcription	Colon Smooth Muscle	Colon
6	chr2:100807400-100812000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr2:100808200-100809800	Flanking Active TSS	Adipose Nuclei	Adipose
8	chr2:100808600-100810400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr2:100809000-100810000	Enhancers	Left Ventricle	heart
10	chr2:100809000-100810000	Enhancers	Right Atrium	heart
11	chr2:100809000-100810000	Enhancers	Right Ventricle	heart
12	chr2:100809000-100810000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
13	chr2:100809000-100810400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr2:100809000-100810800	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr2:100809000-100810800	Enhancers	Stomach Mucosa	stomach
16	chr2:100809000-100811400	Enhancers	Lung	lung
17	chr2:100809200-100809400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr2:100809200-100809800	Enhancers	Fetal Heart	heart
19	chr2:100809200-100809800	ZNF genes & repeats	Fetal Intestine Small	intestine
20	chr2:100809200-100810000	Enhancers	Aorta	Aorta
21	chr2:100809200-100810000	Enhancers	Psoas Muscle	Psoas
22	chr2:100809200-100810000	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr2:100809200-100810200	Enhancers	K562	blood
24	chr2:100809200-100810800	Enhancers	Placenta	Placenta
25	chr2:100809200-100810800	Enhancers	HUVEC	blood vessel

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