Variant report

Variant	rs17023801
Chromosome Location	chr2:100851080-100851081
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs17023659	1.00[ASN][1000 genomes]
rs17023710	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17023791	0.87[ASN][1000 genomes]
rs17023820	0.87[ASN][1000 genomes]
rs17023833	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17024185	1.00[CEU][hapmap]
rs17024216	1.00[CEU][hapmap]
rs62148077	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62148078	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62148079	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62148080	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62148082	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62148083	1.00[ASN][1000 genomes]
rs62148084	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62148085	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62148086	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62148087	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62148088	1.00[ASN][1000 genomes]
rs62148089	1.00[ASN][1000 genomes]
rs62148090	1.00[ASN][1000 genomes]
rs62148092	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62148093	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62148094	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62148095	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62150291	1.00[ASN][1000 genomes]
rs6735369	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007777	chr2:100816913-101308914	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv535844	chr2:100816913-101308914	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv834311	chr2:100816917-100990036	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100844200-100851400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr2:100847400-100851600	Weak transcription	Lung	lung
3	chr2:100849400-100856000	Enhancers	Primary B cells from peripheral blood	blood
4	chr2:100850000-100851200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr2:100850000-100853400	Weak transcription	Fetal Heart	heart
6	chr2:100850200-100851400	Enhancers	Osteobl	bone
7	chr2:100850400-100851400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr2:100850400-100851600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr2:100850400-100851800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr2:100850600-100852000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr2:100850600-100852000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr2:100850600-100852000	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr2:100850600-100852200	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr2:100850800-100851200	Enhancers	Primary B cells from cord blood	blood
15	chr2:100850800-100851800	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr2:100850800-100853800	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr2:100851000-100852200	Enhancers	NH-A	brain
18	chr2:100851000-100852600	Enhancers	GM12878-XiMat	blood
19	chr2:100851000-100853200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr2:100851000-100853200	Weak transcription	Fetal Lung	lung
21	chr2:100851000-100854600	Enhancers	Fetal Thymus	thymus
22	chr2:100851000-100855400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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