Variant report

Variant	rs62148092
Chromosome Location	chr2:100862145-100862146
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs17023659	1.00[ASN][1000 genomes]
rs17023710	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17023791	0.87[ASN][1000 genomes]
rs17023801	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17023820	0.87[ASN][1000 genomes]
rs17023833	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62148077	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62148078	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62148079	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62148080	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62148082	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62148083	1.00[ASN][1000 genomes]
rs62148084	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62148085	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62148086	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62148087	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62148088	1.00[ASN][1000 genomes]
rs62148089	1.00[ASN][1000 genomes]
rs62148090	1.00[ASN][1000 genomes]
rs62148093	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62148094	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62148095	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62150291	1.00[ASN][1000 genomes]
rs6735369	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007777	chr2:100816913-101308914	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv535844	chr2:100816913-101308914	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv834311	chr2:100816917-100990036	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100855200-100865600	Weak transcription	Thymus	Thymus
2	chr2:100856600-100862800	Weak transcription	Fetal Brain Male	brain
3	chr2:100857200-100862800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr2:100858000-100862800	Enhancers	Primary B cells from peripheral blood	blood
5	chr2:100858400-100867800	Enhancers	Primary B cells from cord blood	blood
6	chr2:100858600-100863000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr2:100859400-100863000	Weak transcription	Right Ventricle	heart
8	chr2:100859400-100863600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr2:100859800-100862400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr2:100859800-100862400	Weak transcription	Fetal Muscle Leg	muscle
11	chr2:100859800-100864000	Weak transcription	Fetal Thymus	thymus
12	chr2:100859800-100869600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr2:100860000-100862800	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr2:100860400-100862800	Weak transcription	Fetal Lung	lung
15	chr2:100860800-100862600	Weak transcription	Placenta	Placenta
16	chr2:100861200-100862800	ZNF genes & repeats	GM12878-XiMat	blood
17	chr2:100861200-100863000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr2:100861600-100862200	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr2:100861600-100862400	Enhancers	Osteobl	bone
20	chr2:100861600-100863000	Enhancers	NH-A	brain
21	chr2:100861800-100862400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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