Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:100862709..100864257-chr2:100871262..100872901,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs17023659	1.00[ASN][1000 genomes]
rs17023710	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17023791	0.87[ASN][1000 genomes]
rs17023801	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17023820	0.87[ASN][1000 genomes]
rs17023833	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62148077	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62148078	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62148079	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62148080	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62148082	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62148083	1.00[ASN][1000 genomes]
rs62148084	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62148085	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62148086	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62148087	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62148088	1.00[ASN][1000 genomes]
rs62148089	1.00[ASN][1000 genomes]
rs62148090	1.00[ASN][1000 genomes]
rs62148092	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62148094	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62148095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62150291	1.00[ASN][1000 genomes]
rs6735369	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007777	chr2:100816913-101308914	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv535844	chr2:100816913-101308914	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv834311	chr2:100816917-100990036	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100855200-100865600	Weak transcription	Thymus	Thymus
2	chr2:100858400-100867800	Enhancers	Primary B cells from cord blood	blood
3	chr2:100859400-100863600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr2:100859800-100864000	Weak transcription	Fetal Thymus	thymus
5	chr2:100859800-100869600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr2:100862400-100864400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr2:100862800-100863200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
8	chr2:100862800-100863200	Enhancers	Fetal Lung	lung
9	chr2:100862800-100863800	Enhancers	Fetal Brain Male	brain
10	chr2:100862800-100864000	Enhancers	Spleen	Spleen
11	chr2:100862800-100864200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr2:100862800-100865800	Enhancers	GM12878-XiMat	blood
13	chr2:100863000-100863400	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr2:100863000-100863400	Enhancers	Right Ventricle	heart
15	chr2:100863000-100864000	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr2:100863000-100864000	Enhancers	Fetal Brain Female	brain
17	chr2:100863000-100864200	Enhancers	H1 Cell Line	embryonic stem cell

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