Variant report

Variant	rs17024021
Chromosome Location	chr2:100955814-100955815
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:100933404..100936260-chr2:100953487..100956115,2	K562	blood:
2	chr2:100932853..100934904-chr2:100954615..100957367,2	K562	blood:
3	chr2:100952526..100956486-chr2:100958887..100961434,3	K562	blood:
4	chr2:100937318..100939314-chr2:100955169..100957159,2	MCF-7	breast:
5	chr2:100937601..100941206-chr2:100954662..100959386,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170500	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs17023897	0.89[EUR][1000 genomes]
rs17023990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17024048	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17024150	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17024185	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17024216	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17353694	0.89[EUR][1000 genomes]
rs28827632	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3948255	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57669367	0.89[EUR][1000 genomes]
rs57710676	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs58242629	0.89[EUR][1000 genomes]
rs58420862	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs58658810	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59727890	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60078624	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61057466	0.89[EUR][1000 genomes]
rs61070099	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6732784	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6743347	0.89[EUR][1000 genomes]
rs7582424	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007777	chr2:100816913-101308914	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv535844	chr2:100816913-101308914	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv834311	chr2:100816917-100990036	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv582531	chr2:100908508-101207639	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	esv2753837	chr2:100928086-100955814	Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100955600-100956800	Enhancers	K562	blood
2	chr2:100955800-100956200	Active TSS	Pancreatic Islets	Pancreatic Islet

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