Variant report

Variant	rs17024150
Chromosome Location	chr2:100998226-100998227
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:100993432..100995789-chr2:100996356..101000421,3	MCF-7	breast:
2	chr2:100938015..100940473-chr2:100996215..100998550,2	MCF-7	breast:
3	chr2:100876921..100878044-chr2:100997529..100998340,3	K562	blood:
4	chr2:100935841..100941857-chr2:100994239..100999137,10	MCF-7	breast:
5	chr2:100948566..100950699-chr2:100996503..100999305,2	MCF-7	breast:
6	chr2:100879014..100880290-chr2:100996973..100998375,14	MCF-7	breast:
7	chr2:100879002..100880063-chr2:100997058..100998343,16	K562	blood:
8	chr2:100879538..100882324-chr2:100997148..100999521,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000170500	Chromatin interaction
ENSG00000270699	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1437972	1.00[CEU][hapmap]
rs17023897	1.00[CEU][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17023990	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17024021	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17024048	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17024133	1.00[CEU][hapmap]
rs17024185	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17024216	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17353694	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1898573	1.00[CEU][hapmap]
rs28827632	1.00[EUR][1000 genomes]
rs3948255	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57669367	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57710676	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58242629	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58420862	1.00[EUR][1000 genomes]
rs58658810	1.00[EUR][1000 genomes]
rs59727890	1.00[EUR][1000 genomes]
rs60078624	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61057466	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61070099	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6727379	1.00[CEU][hapmap]
rs6732784	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6743347	1.00[EUR][1000 genomes]
rs6750040	1.00[CEU][hapmap]
rs6758515	1.00[CEU][hapmap]
rs72964116	0.89[EUR][1000 genomes]
rs7582424	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7605818	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007777	chr2:100816913-101308914	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv535844	chr2:100816913-101308914	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv582531	chr2:100908508-101207639	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv874701	chr2:100976139-101023261	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100993200-101017800	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr2:100996400-101007600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr2:100997400-100998400	Enhancers	Primary B cells from peripheral blood	blood
4	chr2:100997800-101002800	Weak transcription	K562	blood
5	chr2:100997800-101008400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr2:100998200-101008400	Weak transcription	Dnd41	blood
7	chr2:100998200-101008800	Weak transcription	GM12878-XiMat	blood
8	chr2:100998200-101009000	Weak transcription	A549	lung
9	chr2:100998200-101022600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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