Variant report

Variant	rs17024133
Chromosome Location	chr2:100995257-100995258
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 135 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:131)

rs_ID	r²[population]
rs10167159	0.88[ASN][1000 genomes]
rs10172841	0.97[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes]
rs10180570	1.00[ASN][1000 genomes]
rs10180685	0.86[AMR][1000 genomes]
rs10184899	1.00[ASN][1000 genomes]
rs10193535	0.83[ASW][hapmap];1.00[CHB][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[ASN][1000 genomes]
rs10198495	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10198682	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10200480	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10201098	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10204833	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10206374	0.83[ASW][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10208900	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10208911	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10209186	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1057056	0.83[ASW][hapmap];0.90[GIH][hapmap]
rs1107429	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs1124009	0.83[ASW][hapmap];0.90[GIH][hapmap];0.86[MEX][hapmap]
rs13391930	1.00[ASN][1000 genomes]
rs13396147	1.00[ASN][1000 genomes]
rs13400841	0.86[GIH][hapmap]
rs13404823	1.00[ASN][1000 genomes]
rs13407408	1.00[ASN][1000 genomes]
rs13407648	1.00[ASN][1000 genomes]
rs13407891	1.00[ASN][1000 genomes]
rs13410582	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13419808	1.00[ASN][1000 genomes]
rs13420942	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1347721	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1370627	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.88[ASN][1000 genomes]
rs1437970	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1437972	1.00[CEU][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs17023897	1.00[CEU][hapmap]
rs17023985	0.88[ASN][1000 genomes]
rs17024035	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.88[ASN][1000 genomes]
rs17024048	1.00[CEU][hapmap]
rs17024129	0.83[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17024136	0.83[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17024144	0.83[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17024150	1.00[CEU][hapmap]
rs17024209	0.90[GIH][hapmap];0.86[MEX][hapmap]
rs17353694	1.00[CEU][hapmap]
rs1898571	1.00[ASN][1000 genomes]
rs1898573	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs1898574	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2309793	0.88[ASN][1000 genomes]
rs2309801	0.86[GIH][hapmap]
rs3748936	0.83[ASW][hapmap];0.90[GIH][hapmap]
rs3791358	0.93[GIH][hapmap];0.88[MEX][hapmap]
rs4149509	0.90[GIH][hapmap]
rs4149514	0.90[GIH][hapmap];0.86[MEX][hapmap]
rs4149515	0.90[GIH][hapmap];0.86[MEX][hapmap]
rs4149516	0.86[AMR][1000 genomes]
rs4850932	0.86[GIH][hapmap]
rs55640826	1.00[ASN][1000 genomes]
rs55843950	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56051859	0.88[ASN][1000 genomes]
rs56118658	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56342384	0.88[ASN][1000 genomes]
rs56656536	1.00[ASN][1000 genomes]
rs58876304	1.00[ASN][1000 genomes]
rs60131548	1.00[ASN][1000 genomes]
rs60468180	0.83[AMR][1000 genomes]
rs60609848	1.00[ASN][1000 genomes]
rs60898093	1.00[ASN][1000 genomes]
rs61321970	0.88[ASN][1000 genomes]
rs6542931	0.88[ASN][1000 genomes]
rs6542932	0.88[ASN][1000 genomes]
rs6542939	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6542941	0.88[ASN][1000 genomes]
rs6542943	0.86[EUR][1000 genomes]
rs6542945	0.93[EUR][1000 genomes]
rs6542946	0.97[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes]
rs6708942	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6713862	1.00[ASN][1000 genomes]
rs6714109	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6716009	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6716367	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6724695	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6725672	0.83[ASW][hapmap];0.90[GIH][hapmap]
rs6727379	1.00[CEU][hapmap];0.85[TSI][hapmap]
rs6728575	0.97[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap]
rs6732285	1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];0.88[ASN][1000 genomes]
rs6739576	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6740098	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6750040	1.00[CEU][hapmap]
rs6750866	0.88[ASN][1000 genomes]
rs6754379	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6754869	0.90[GIH][hapmap]
rs6755395	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6757774	1.00[ASN][1000 genomes]
rs6758156	1.00[ASN][1000 genomes]
rs6758161	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6758515	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6758622	0.90[GIH][hapmap]
rs6761561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72960172	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72960184	1.00[ASN][1000 genomes]
rs72960186	1.00[ASN][1000 genomes]
rs72960202	1.00[ASN][1000 genomes]
rs73966107	0.88[ASN][1000 genomes]
rs73966108	0.88[ASN][1000 genomes]
rs73968412	0.88[ASN][1000 genomes]
rs73968415	0.82[ASN][1000 genomes]
rs73968817	0.88[ASN][1000 genomes]
rs7556717	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7557137	0.88[ASN][1000 genomes]
rs7559939	1.00[ASN][1000 genomes]
rs7559946	1.00[ASN][1000 genomes]
rs7562461	1.00[ASN][1000 genomes]
rs7562479	1.00[ASN][1000 genomes]
rs7562486	1.00[ASN][1000 genomes]
rs7562615	1.00[ASN][1000 genomes]
rs7564178	1.00[ASN][1000 genomes]
rs7567130	0.80[AMR][1000 genomes]
rs7571659	0.97[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes]
rs7572119	1.00[ASN][1000 genomes]
rs7574684	1.00[ASN][1000 genomes]
rs7575422	0.90[GIH][hapmap]
rs7576749	1.00[ASN][1000 genomes]
rs7582096	0.86[GIH][hapmap]
rs7582546	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs7585713	0.86[GIH][hapmap]
rs7585898	0.83[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7587333	1.00[ASN][1000 genomes]
rs7597631	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7597722	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7598205	0.97[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap]
rs7606723	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs876439	0.97[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap]
rs9308834	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007777	chr2:100816913-101308914	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv535844	chr2:100816913-101308914	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv582531	chr2:100908508-101207639	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv874701	chr2:100976139-101023261	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100993200-101017800	Weak transcription	Primary monocytes fromperipheralblood	blood

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