Variant report

Variant	rs17024048
Chromosome Location	chr2:100969320-100969321
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:100935867..100940254-chr2:100962502..100969736,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170500	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1437972	1.00[CEU][hapmap]
rs17023897	1.00[CEU][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17023990	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17024021	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17024133	1.00[CEU][hapmap]
rs17024150	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17024185	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17024216	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17353694	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1898573	1.00[CEU][hapmap]
rs28827632	1.00[EUR][1000 genomes]
rs3948255	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57669367	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57710676	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58242629	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58420862	1.00[EUR][1000 genomes]
rs58658810	1.00[EUR][1000 genomes]
rs59727890	1.00[EUR][1000 genomes]
rs60078624	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61057466	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61070099	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6727379	1.00[CEU][hapmap]
rs6732784	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6743347	1.00[EUR][1000 genomes]
rs6750040	1.00[CEU][hapmap]
rs6758515	1.00[CEU][hapmap]
rs72964116	0.89[EUR][1000 genomes]
rs7582424	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7605818	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007777	chr2:100816913-101308914	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv535844	chr2:100816913-101308914	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv834311	chr2:100816917-100990036	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv582531	chr2:100908508-101207639	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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