Variant report

Variant	rs6758515
Chromosome Location	chr2:100996892-100996893
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:100929398..100931678-chr2:100996372..100997972,2	MCF-7	breast:
2	chr2:100993432..100995789-chr2:100996356..101000421,3	MCF-7	breast:
3	chr2:100938015..100940473-chr2:100996215..100998550,2	MCF-7	breast:
4	chr2:100935841..100941857-chr2:100994239..100999137,10	MCF-7	breast:
5	chr2:100948566..100950699-chr2:100996503..100999305,2	MCF-7	breast:
6	chr2:100879064..100881407-chr2:100995755..100997926,2	MCF-7	breast:
7	chr2:100908539..100910145-chr2:100995455..100997648,2	MCF-7	breast:
8	chr2:100887151..100889379-chr2:100995251..100997731,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000270699	Chromatin interaction
ENSG00000170500	Chromatin interaction

Extended variants
information (count: 114 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs10167159	0.88[ASN][1000 genomes]
rs10172841	0.86[AMR][1000 genomes]
rs10180570	1.00[ASN][1000 genomes]
rs10180685	0.86[AMR][1000 genomes]
rs10184899	1.00[ASN][1000 genomes]
rs10193535	1.00[ASN][1000 genomes]
rs10198495	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10198682	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10200480	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10201098	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10204833	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10206374	1.00[ASN][1000 genomes]
rs10208900	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10208911	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10209186	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1107429	0.88[ASN][1000 genomes]
rs13391930	1.00[ASN][1000 genomes]
rs13396147	1.00[ASN][1000 genomes]
rs13404823	1.00[ASN][1000 genomes]
rs13407408	1.00[ASN][1000 genomes]
rs13407648	1.00[ASN][1000 genomes]
rs13407891	1.00[ASN][1000 genomes]
rs13410582	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13419808	1.00[ASN][1000 genomes]
rs13420942	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1347721	1.00[ASN][1000 genomes]
rs1370627	0.88[ASN][1000 genomes]
rs1437970	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1437972	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs17023897	1.00[CEU][hapmap]
rs17023985	0.88[ASN][1000 genomes]
rs17024035	0.88[ASN][1000 genomes]
rs17024048	1.00[CEU][hapmap]
rs17024129	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17024133	1.00[CEU][hapmap]
rs17024136	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17024144	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17024150	1.00[CEU][hapmap]
rs17353694	1.00[CEU][hapmap]
rs1898571	1.00[ASN][1000 genomes]
rs1898573	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs1898574	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2309793	0.88[ASN][1000 genomes]
rs4149516	0.86[AMR][1000 genomes]
rs55640826	1.00[ASN][1000 genomes]
rs55843950	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56051859	0.88[ASN][1000 genomes]
rs56118658	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56342384	0.88[ASN][1000 genomes]
rs56656536	1.00[ASN][1000 genomes]
rs58876304	1.00[ASN][1000 genomes]
rs60131548	1.00[ASN][1000 genomes]
rs60468180	0.83[AMR][1000 genomes]
rs60609848	1.00[ASN][1000 genomes]
rs60898093	1.00[ASN][1000 genomes]
rs61321970	0.88[ASN][1000 genomes]
rs6542931	0.88[ASN][1000 genomes]
rs6542932	0.88[ASN][1000 genomes]
rs6542939	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6542941	0.88[ASN][1000 genomes]
rs6542945	0.80[EUR][1000 genomes]
rs6542946	0.95[AMR][1000 genomes]
rs6708942	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6713862	1.00[ASN][1000 genomes]
rs6714109	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6716009	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6716367	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6724695	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6727379	1.00[CEU][hapmap]
rs6732285	0.88[ASN][1000 genomes]
rs6739576	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6740098	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6750040	1.00[CEU][hapmap]
rs6750866	0.88[ASN][1000 genomes]
rs6754379	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6755395	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6757774	1.00[ASN][1000 genomes]
rs6758156	1.00[ASN][1000 genomes]
rs6758161	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6761561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72960172	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72960184	1.00[ASN][1000 genomes]
rs72960186	1.00[ASN][1000 genomes]
rs72960202	1.00[ASN][1000 genomes]
rs73966107	0.88[ASN][1000 genomes]
rs73966108	0.88[ASN][1000 genomes]
rs73968412	0.88[ASN][1000 genomes]
rs73968415	0.82[ASN][1000 genomes]
rs73968817	0.88[ASN][1000 genomes]
rs7556717	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7557137	0.88[ASN][1000 genomes]
rs7559939	1.00[ASN][1000 genomes]
rs7559946	1.00[ASN][1000 genomes]
rs7562461	1.00[ASN][1000 genomes]
rs7562479	1.00[ASN][1000 genomes]
rs7562486	1.00[ASN][1000 genomes]
rs7562615	1.00[ASN][1000 genomes]
rs7564178	1.00[ASN][1000 genomes]
rs7567130	0.80[AMR][1000 genomes]
rs7571659	0.86[AMR][1000 genomes]
rs7572119	1.00[ASN][1000 genomes]
rs7574684	1.00[ASN][1000 genomes]
rs7576749	1.00[ASN][1000 genomes]
rs7582546	0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs7585898	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7587333	1.00[ASN][1000 genomes]
rs7597631	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7597722	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7606723	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9308834	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007777	chr2:100816913-101308914	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv535844	chr2:100816913-101308914	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv582531	chr2:100908508-101207639	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv874701	chr2:100976139-101023261	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100993200-101017800	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr2:100996400-101007600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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