Variant report
| Variant | rs58242629 |
|---|---|
| Chromosome Location | chr2:100995027-100995028 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:100935841..100941857-chr2:100994239..100999137,10 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000170500 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs17023897 | 1.00[EUR][1000 genomes] |
| rs17023990 | 0.89[EUR][1000 genomes] |
| rs17024021 | 0.89[EUR][1000 genomes] |
| rs17024048 | 0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17024150 | 0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17024185 | 0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17024216 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17353694 | 1.00[EUR][1000 genomes] |
| rs28827632 | 1.00[EUR][1000 genomes] |
| rs3948255 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57669367 | 1.00[EUR][1000 genomes] |
| rs57710676 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58420862 | 1.00[EUR][1000 genomes] |
| rs58658810 | 1.00[EUR][1000 genomes] |
| rs59727890 | 1.00[EUR][1000 genomes] |
| rs60078624 | 0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61057466 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61070099 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6732784 | 0.89[EUR][1000 genomes] |
| rs6743347 | 1.00[EUR][1000 genomes] |
| rs72964116 | 0.89[EUR][1000 genomes] |
| rs7582424 | 0.89[EUR][1000 genomes] |
| rs7605818 | 0.89[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1007777 | chr2:100816913-101308914 | Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 30 gene(s) | inside rSNPs | diseases |
| 2 | nsv535844 | chr2:100816913-101308914 | Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 30 gene(s) | inside rSNPs | diseases |
| 3 | nsv582531 | chr2:100908508-101207639 | Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
| 4 | nsv874701 | chr2:100976139-101023261 | Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:100993200-101017800 | Weak transcription | Primary monocytes fromperipheralblood | blood |
