Variant report

Variant	rs17024022
Chromosome Location	chr1:215171640-215171641
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10429947	0.86[CHB][hapmap]
rs10779632	1.00[CHB][hapmap];0.85[CHD][hapmap];0.92[JPT][hapmap]
rs12023861	0.86[CHB][hapmap]
rs12025006	0.85[CHB][hapmap];0.84[CHD][hapmap];0.84[GIH][hapmap];0.92[JPT][hapmap]
rs12031084	0.82[ASN][1000 genomes]
rs12047560	0.93[CHB][hapmap];0.90[CHD][hapmap];0.84[GIH][hapmap];0.92[JPT][hapmap]
rs1349672	0.93[CHB][hapmap];0.92[JPT][hapmap]
rs1452633	0.87[CHB][hapmap];0.90[CHD][hapmap]
rs1452634	1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.92[JPT][hapmap];0.96[ASN][1000 genomes]
rs2601652	0.96[ASN][1000 genomes]
rs2841623	0.93[ASN][1000 genomes]
rs544535	0.85[ASN][1000 genomes]
rs575747	0.92[ASN][1000 genomes]
rs6657460	0.85[ASN][1000 genomes]
rs6659170	0.93[ASN][1000 genomes]
rs7538655	0.93[CHB][hapmap];0.81[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468105	chr1:215167236-215248417	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv549182	chr1:215167236-215248417	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215164200-215174800	Weak transcription	NH-A	brain
2	chr1:215164800-215175000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr1:215167400-215174600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:215168000-215174800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr1:215171200-215172800	Strong transcription	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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