Variant report

Variant	rs17024523
Chromosome Location	chr1:215401905-215401906
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs56237556	1.00[AMR][1000 genomes]
rs60293336	1.00[AMR][1000 genomes]
rs73086005	1.00[AMR][1000 genomes]
rs73086008	1.00[AMR][1000 genomes]
rs73086014	1.00[AMR][1000 genomes]
rs73086019	1.00[AMR][1000 genomes]
rs73086026	1.00[AMR][1000 genomes]
rs73086050	1.00[AMR][1000 genomes]
rs73086052	1.00[AMR][1000 genomes]
rs73088074	1.00[AMR][1000 genomes]
rs73088077	1.00[AMR][1000 genomes]
rs73091972	1.00[AMR][1000 genomes]
rs73091991	1.00[AMR][1000 genomes]
rs73091995	1.00[AMR][1000 genomes]
rs74140947	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873169	chr1:215264486-215453286	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
2	nsv873170	chr1:215367248-215440975	Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
3	nsv527715	chr1:215396543-215402022	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv518732	chr1:215398012-215402022	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215380600-215408000	Weak transcription	Osteobl	bone
2	chr1:215388600-215408200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr1:215392000-215408000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:215394000-215407800	Weak transcription	NHDF-Ad	bronchial
5	chr1:215401400-215402000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
6	chr1:215401400-215402000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr1:215401800-215402000	Enhancers	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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