Variant report

Variant	rs73086052
Chromosome Location	chr1:215434411-215434412
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17024523	1.00[AMR][1000 genomes]
rs56237556	1.00[AMR][1000 genomes]
rs60293336	1.00[AMR][1000 genomes]
rs73086005	1.00[AMR][1000 genomes]
rs73086008	1.00[AMR][1000 genomes]
rs73086014	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73086019	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73086026	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73086050	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73088074	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73088077	1.00[AMR][1000 genomes]
rs73091972	1.00[AMR][1000 genomes]
rs73091991	1.00[AMR][1000 genomes]
rs73091995	1.00[AMR][1000 genomes]
rs74140947	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873169	chr1:215264486-215453286	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
2	nsv873170	chr1:215367248-215440975	Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215434000-215434600	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr1:215434000-215435000	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr1:215434400-215434600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr1:215434400-215434800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr1:215434400-215434800	Enhancers	HUES64 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links