Variant report

Variant	rs60293336
Chromosome Location	chr1:215578932-215578933
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17024523	1.00[AMR][1000 genomes]
rs73081457	1.00[AMR][1000 genomes]
rs73086005	1.00[AMR][1000 genomes]
rs73086008	1.00[AMR][1000 genomes]
rs73086014	1.00[AMR][1000 genomes]
rs73086019	1.00[AMR][1000 genomes]
rs73086026	1.00[AMR][1000 genomes]
rs73086050	1.00[AMR][1000 genomes]
rs73086052	1.00[AMR][1000 genomes]
rs73088074	1.00[AMR][1000 genomes]
rs73088077	1.00[AMR][1000 genomes]
rs73091972	1.00[AMR][1000 genomes]
rs73091991	1.00[AMR][1000 genomes]
rs73091995	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832537	chr1:215509026-215705105	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv1796390	chr1:215561548-215799074	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1014266	chr1:215573051-215730838	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215575600-215580600	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr1:215578000-215588000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:215578200-215579000	Enhancers	Muscle Satellite Cultured Cells	--
4	chr1:215578200-215579200	Enhancers	HUVEC	blood vessel
5	chr1:215578200-215579400	Enhancers	HSMM	muscle
6	chr1:215578400-215589800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr1:215578600-215579000	Enhancers	NHDF-Ad	bronchial

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links