Variant report

Variant	rs73088074
Chromosome Location	chr1:215449063-215449064
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17024523	1.00[AMR][1000 genomes]
rs56237556	1.00[AMR][1000 genomes]
rs60293336	1.00[AMR][1000 genomes]
rs73081457	1.00[AMR][1000 genomes]
rs73086005	1.00[AMR][1000 genomes]
rs73086008	1.00[AMR][1000 genomes]
rs73086014	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73086019	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73086026	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73086050	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73086052	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73088077	1.00[AMR][1000 genomes]
rs73091972	1.00[AMR][1000 genomes]
rs73091991	1.00[AMR][1000 genomes]
rs73091995	1.00[AMR][1000 genomes]
rs74140947	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873169	chr1:215264486-215453286	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215447600-215449600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr1:215447800-215451200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr1:215448000-215450000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr1:215448200-215450000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:215448200-215450800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr1:215448200-215451400	Weak transcription	Osteobl	bone
7	chr1:215448400-215450600	Weak transcription	HUVEC	blood vessel
8	chr1:215448600-215450600	Weak transcription	NHDF-Ad	bronchial
9	chr1:215449000-215450800	Weak transcription	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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