Variant report

Variant	rs17027175
Chromosome Location	chr2:86599372-86599373
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:86593659..86596612-chr2:86598158..86600807,3	K562	blood:
2	chr2:86593659..86595230-chr2:86598158..86600807,2	K562	blood:
3	chr2:86445690..86448011-chr2:86598984..86601773,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11883808	1.00[EUR][1000 genomes]
rs11889684	1.00[EUR][1000 genomes]
rs11890532	1.00[EUR][1000 genomes]
rs56902328	1.00[EUR][1000 genomes]
rs59057655	1.00[EUR][1000 genomes]
rs59347333	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6547675	1.00[EUR][1000 genomes]
rs6704713	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6728007	1.00[EUR][1000 genomes]
rs6736881	1.00[EUR][1000 genomes]
rs6743435	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6746684	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6760662	1.00[EUR][1000 genomes]
rs6761464	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3412938	chr2:86370969-86867936	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86596000-86599400	Weak transcription	Lung	lung
2	chr2:86596000-86599600	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr2:86596000-86600200	Weak transcription	Psoas Muscle	Psoas
4	chr2:86596000-86600400	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr2:86598000-86599800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr2:86598000-86600400	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr2:86598000-86600400	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr2:86598200-86599800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr2:86598200-86600200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr2:86598400-86600200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr2:86598400-86600200	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr2:86598600-86599400	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr2:86598600-86599800	Enhancers	Primary B cells from peripheral blood	blood
14	chr2:86598600-86599800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
15	chr2:86598600-86599800	Enhancers	Fetal Lung	lung
16	chr2:86598600-86600000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr2:86598600-86600000	Enhancers	Fetal Thymus	thymus
18	chr2:86598600-86600200	Enhancers	Primary T cells fromperipheralblood	blood
19	chr2:86598600-86600400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr2:86598800-86599600	Enhancers	K562	blood
21	chr2:86598800-86599800	Enhancers	Primary B cells from cord blood	blood
22	chr2:86599000-86599400	Weak transcription	Colon Smooth Muscle	Colon
23	chr2:86599000-86599600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr2:86599000-86599800	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr2:86599000-86600000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
26	chr2:86599000-86600200	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr2:86599000-86600800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
28	chr2:86599200-86599600	Weak transcription	Fetal Intestine Small	intestine
29	chr2:86599200-86600000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr2:86599200-86600600	Enhancers	Primary T cells from cord blood	blood

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