Variant report

Variant	rs6704713
Chromosome Location	chr2:86600331-86600332
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86525502..86526465-chr2:86599763..86600646,3	MCF-7	breast:
2	chr2:86447915..86448986-chr2:86599719..86600803,9	MCF-7	breast:
3	chr2:86594067..86596122-chr2:86600316..86602892,2	MCF-7	breast:
4	chr2:86593659..86596612-chr2:86598158..86600807,3	K562	blood:
5	chr2:86476675..86477444-chr2:86599745..86600661,2	MCF-7	breast:
6	chr2:86593659..86595230-chr2:86598158..86600807,2	K562	blood:
7	chr2:86445690..86448011-chr2:86598984..86601773,2	MCF-7	breast:
8	chr2:86525418..86526527-chr2:86599676..86600615,4	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11883808	1.00[EUR][1000 genomes]
rs11889684	1.00[EUR][1000 genomes]
rs11890532	1.00[EUR][1000 genomes]
rs17027175	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56902328	1.00[EUR][1000 genomes]
rs59057655	1.00[EUR][1000 genomes]
rs59347333	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6547675	1.00[EUR][1000 genomes]
rs6728007	1.00[EUR][1000 genomes]
rs6736881	1.00[EUR][1000 genomes]
rs6743435	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6746684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6760662	1.00[EUR][1000 genomes]
rs6761464	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3412938	chr2:86370969-86867936	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86596000-86600400	Enhancers	Primary T helper naive cells from peripheral blood	blood
2	chr2:86598000-86600400	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr2:86598000-86600400	Enhancers	Primary T killer memory cells from peripheral blood	blood
4	chr2:86598600-86600400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr2:86599000-86600800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr2:86599200-86600600	Enhancers	Primary T cells from cord blood	blood
7	chr2:86599400-86600400	Enhancers	Colon Smooth Muscle	Colon
8	chr2:86599600-86600400	Enhancers	Fetal Intestine Small	intestine
9	chr2:86599600-86600600	Enhancers	Duodenum Smooth Muscle	Duodenum
10	chr2:86600000-86600400	Enhancers	H9 Cell Line	embryonic stem cell
11	chr2:86600000-86600400	Enhancers	Esophagus	oesophagus
12	chr2:86600000-86600400	Enhancers	Fetal Muscle Leg	muscle
13	chr2:86600200-86600400	Enhancers	Liver	Liver
14	chr2:86600200-86600400	Enhancers	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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