Variant report

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:86525502..86526465-chr2:86599763..86600646,3	MCF-7	breast:
2	chr2:86447915..86448986-chr2:86599719..86600803,9	MCF-7	breast:
3	chr2:86593659..86596612-chr2:86598158..86600807,3	K562	blood:
4	chr2:86476675..86477444-chr2:86599745..86600661,2	MCF-7	breast:
5	chr2:86593659..86595230-chr2:86598158..86600807,2	K562	blood:
6	chr2:86445690..86448011-chr2:86598984..86601773,2	MCF-7	breast:
7	chr2:86525418..86526527-chr2:86599676..86600615,4	MCF-7	breast:
8	chr2:86477266..86477808-chr2:86599722..86600256,2	MCF-7	breast:

No data

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11883808	1.00[EUR][1000 genomes]
rs11889684	1.00[EUR][1000 genomes]
rs11890532	1.00[EUR][1000 genomes]
rs17027175	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56902328	1.00[EUR][1000 genomes]
rs59057655	1.00[EUR][1000 genomes]
rs59347333	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6547675	1.00[EUR][1000 genomes]
rs6704713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6728007	1.00[EUR][1000 genomes]
rs6736881	1.00[EUR][1000 genomes]
rs6743435	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6760662	1.00[EUR][1000 genomes]
rs6761464	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3412938	chr2:86370969-86867936	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86596000-86600200	Weak transcription	Psoas Muscle	Psoas
2	chr2:86596000-86600400	Enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr2:86598000-86600400	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr2:86598000-86600400	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr2:86598200-86600200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr2:86598400-86600200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr2:86598400-86600200	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr2:86598600-86600200	Enhancers	Primary T cells fromperipheralblood	blood
9	chr2:86598600-86600400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr2:86599000-86600200	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr2:86599000-86600800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr2:86599200-86600600	Enhancers	Primary T cells from cord blood	blood
13	chr2:86599400-86600200	Enhancers	Duodenum Mucosa	Duodenum
14	chr2:86599400-86600200	Enhancers	Lung	lung
15	chr2:86599400-86600400	Enhancers	Colon Smooth Muscle	Colon
16	chr2:86599600-86600400	Enhancers	Fetal Intestine Small	intestine
17	chr2:86599600-86600600	Enhancers	Duodenum Smooth Muscle	Duodenum
18	chr2:86600000-86600200	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr2:86600000-86600400	Enhancers	H9 Cell Line	embryonic stem cell
20	chr2:86600000-86600400	Enhancers	Esophagus	oesophagus
21	chr2:86600000-86600400	Enhancers	Fetal Muscle Leg	muscle

Quick Search: