Variant report

Variant	rs56902328
Chromosome Location	chr2:86522166-86522167
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86520039..86522438-chr2:86848868..86850402,2	K562	blood:

Variant related genes	Relation type
ENSG00000239305	Chromatin interaction
ENSG00000249884	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10173343	0.83[AMR][1000 genomes]
rs10188530	0.83[AMR][1000 genomes]
rs10206656	0.83[AMR][1000 genomes]
rs10206664	0.83[AMR][1000 genomes]
rs11883808	1.00[EUR][1000 genomes]
rs11889684	1.00[EUR][1000 genomes]
rs11890532	1.00[EUR][1000 genomes]
rs13389970	0.83[AMR][1000 genomes]
rs13417321	0.83[AMR][1000 genomes]
rs17027175	1.00[EUR][1000 genomes]
rs55877531	0.83[AMR][1000 genomes]
rs59057655	1.00[EUR][1000 genomes]
rs59347333	1.00[EUR][1000 genomes]
rs61258813	0.83[AMR][1000 genomes]
rs6547675	1.00[EUR][1000 genomes]
rs6704713	1.00[EUR][1000 genomes]
rs6728007	1.00[EUR][1000 genomes]
rs6736881	1.00[EUR][1000 genomes]
rs6743435	1.00[EUR][1000 genomes]
rs6746684	1.00[EUR][1000 genomes]
rs6760662	1.00[EUR][1000 genomes]
rs6761464	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3412938	chr2:86370969-86867936	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86511200-86524000	Weak transcription	Aorta	Aorta
2	chr2:86512400-86524000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr2:86514000-86529200	Weak transcription	Pancreas	Pancrea
4	chr2:86517800-86524000	Weak transcription	Right Atrium	heart
5	chr2:86518400-86527600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr2:86520200-86522600	Enhancers	Brain Hippocampus Middle	brain
7	chr2:86520400-86524000	Weak transcription	Right Ventricle	heart
8	chr2:86520600-86523400	Enhancers	Fetal Intestine Large	intestine
9	chr2:86520600-86524000	Weak transcription	Left Ventricle	heart
10	chr2:86520600-86524000	Weak transcription	Psoas Muscle	Psoas
11	chr2:86520600-86524600	Weak transcription	Fetal Muscle Leg	muscle
12	chr2:86521000-86525000	Weak transcription	HSMMtube	muscle
13	chr2:86521000-86525600	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr2:86521200-86522200	Weak transcription	Brain Anterior Caudate	brain
15	chr2:86521200-86523200	Weak transcription	Fetal Brain Female	brain
16	chr2:86521200-86524000	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr2:86521200-86524000	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr2:86521200-86524200	Weak transcription	Colon Smooth Muscle	Colon
19	chr2:86521200-86524200	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr2:86521200-86524400	Weak transcription	Brain Cingulate Gyrus	brain
21	chr2:86521400-86524400	Weak transcription	Fetal Heart	heart
22	chr2:86521600-86528600	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr2:86521800-86522600	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr2:86521800-86522800	Enhancers	Fetal Intestine Small	intestine
25	chr2:86521800-86523000	Enhancers	Brain Germinal Matrix	brain
26	chr2:86522000-86522400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr2:86522000-86522400	Enhancers	Sigmoid Colon	Sigmoid Colon
28	chr2:86522000-86522600	Enhancers	Brain Angular Gyrus	brain
29	chr2:86522000-86522600	Enhancers	Fetal Brain Male	brain
30	chr2:86522000-86522600	Enhancers	Rectal Mucosa Donor 31	rectum
31	chr2:86522000-86522600	Enhancers	Small Intestine	intestine
32	chr2:86522000-86522600	Enhancers	HepG2	liver
33	chr2:86522000-86522800	Enhancers	Brain Substantia Nigra	brain
34	chr2:86522000-86522800	Enhancers	Duodenum Mucosa	Duodenum
35	chr2:86522000-86523200	Weak transcription	Stomach Smooth Muscle	stomach
36	chr2:86522000-86523600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links