Variant report

Variant	rs17030692
Chromosome Location	chr4:101898865-101898866
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:101897670..101899560-chr4:101901364..101903543,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1532443	0.93[ASN][1000 genomes]
rs1908808	0.96[ASN][1000 genomes]
rs2132693	0.96[ASN][1000 genomes]
rs2645374	0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2732501	0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2732502	0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2732505	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2732507	0.92[ASN][1000 genomes]
rs2732508	0.93[ASN][1000 genomes]
rs2732513	0.92[ASN][1000 genomes]
rs2850608	0.96[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2850609	0.92[ASN][1000 genomes]
rs2850610	0.92[ASN][1000 genomes]
rs2850612	0.94[ASN][1000 genomes]
rs2851041	0.92[ASN][1000 genomes]
rs2851042	0.96[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2851046	0.93[ASN][1000 genomes]
rs2851048	0.92[ASN][1000 genomes]
rs2851051	0.96[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2851056	0.92[ASN][1000 genomes]
rs72503769	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101896800-101901800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr4:101896800-101906000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr4:101896800-101906400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr4:101897000-101902600	Weak transcription	Right Atrium	heart
5	chr4:101897000-101902800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr4:101897200-101902800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr4:101897200-101906200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr4:101897400-101903600	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr4:101898200-101899800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr4:101898400-101899400	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr4:101898400-101899800	Enhancers	Liver	Liver
12	chr4:101898400-101899800	Enhancers	Duodenum Smooth Muscle	Duodenum
13	chr4:101898600-101899000	Enhancers	Rectal Smooth Muscle	rectum
14	chr4:101898600-101899000	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr4:101898600-101899200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr4:101898600-101899200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr4:101898600-101899400	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr4:101898600-101899600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr4:101898600-101899800	Enhancers	Adipose Nuclei	Adipose
20	chr4:101898800-101899200	Flanking Active TSS	Colon Smooth Muscle	Colon
21	chr4:101898800-101899200	Enhancers	Fetal Brain Female	brain
22	chr4:101898800-101899400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr4:101898800-101899400	Enhancers	Ovary	ovary
24	chr4:101898800-101902800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr4:101898800-101907600	Weak transcription	Left Ventricle	heart

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