Variant report

Variant	rs2645374
Chromosome Location	chr4:101910070-101910071
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1532443	0.98[ASN][1000 genomes]
rs17030692	0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1908808	0.96[ASN][1000 genomes]
rs2132693	0.96[ASN][1000 genomes]
rs2732501	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2732502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2732505	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2732507	0.99[ASN][1000 genomes]
rs2732508	0.98[ASN][1000 genomes]
rs2732513	0.97[ASN][1000 genomes]
rs2850608	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2850609	0.99[ASN][1000 genomes]
rs2850610	0.99[ASN][1000 genomes]
rs2850612	0.97[ASN][1000 genomes]
rs2851041	0.99[ASN][1000 genomes]
rs2851042	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2851046	0.98[ASN][1000 genomes]
rs2851048	0.99[ASN][1000 genomes]
rs2851051	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2851056	0.97[ASN][1000 genomes]
rs72503769	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101905200-101912200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr4:101907000-101911400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr4:101907800-101912000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr4:101907800-101912800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:101908000-101911200	Weak transcription	HSMM	muscle
6	chr4:101908000-101912800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr4:101908400-101910600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr4:101908400-101911200	Weak transcription	HSMMtube	muscle
9	chr4:101908600-101910200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr4:101908600-101912000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr4:101908800-101911800	Weak transcription	NH-A	brain
12	chr4:101908800-101912800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr4:101909600-101913000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr4:101910000-101910200	Enhancers	H1 Cell Line	embryonic stem cell
15	chr4:101910000-101910200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr4:101910000-101910200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr4:101910000-101910200	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr4:101910000-101910200	Enhancers	NHDF-Ad	bronchial
19	chr4:101910000-101910200	Bivalent Enhancer	Osteobl	bone

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