Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1532443	0.97[ASN][1000 genomes]
rs17030692	0.96[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1908808	0.95[ASN][1000 genomes]
rs2132693	0.95[ASN][1000 genomes]
rs2645374	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2732501	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2732502	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2732505	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2732507	0.98[ASN][1000 genomes]
rs2732508	0.97[ASN][1000 genomes]
rs2732513	0.97[ASN][1000 genomes]
rs2850608	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2850609	0.98[ASN][1000 genomes]
rs2850610	0.98[ASN][1000 genomes]
rs2850612	0.96[ASN][1000 genomes]
rs2851041	0.98[ASN][1000 genomes]
rs2851042	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2851046	0.97[ASN][1000 genomes]
rs2851048	0.98[ASN][1000 genomes]
rs2851056	0.98[ASN][1000 genomes]
rs72503769	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101926800-101927400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:101926800-101927400	Enhancers	GM12878-XiMat	blood

Quick Search: