Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:101897670..101899560-chr4:101901364..101903543,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1532443	0.88[ASN][1000 genomes]
rs17030692	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1908808	0.91[ASN][1000 genomes]
rs2132693	0.91[ASN][1000 genomes]
rs2645374	0.88[ASN][1000 genomes]
rs2732501	0.88[ASN][1000 genomes]
rs2732502	0.88[ASN][1000 genomes]
rs2732505	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2732507	0.87[ASN][1000 genomes]
rs2732508	0.88[ASN][1000 genomes]
rs2732513	0.87[ASN][1000 genomes]
rs2850608	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2850609	0.87[ASN][1000 genomes]
rs2850610	0.87[ASN][1000 genomes]
rs2850612	0.89[ASN][1000 genomes]
rs2851041	0.87[ASN][1000 genomes]
rs2851042	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2851046	0.88[ASN][1000 genomes]
rs2851048	0.87[ASN][1000 genomes]
rs2851051	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2851056	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101896600-101898600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:101896800-101898600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr4:101896800-101901800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr4:101896800-101906000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr4:101896800-101906400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr4:101897000-101902600	Weak transcription	Right Atrium	heart
7	chr4:101897000-101902800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr4:101897200-101902800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr4:101897200-101906200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr4:101897400-101903600	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr4:101898000-101898800	Enhancers	Colon Smooth Muscle	Colon

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