Variant report

Variant	rs17031491
Chromosome Location	chr3:34309291-34309292
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12497198	0.86[EUR][1000 genomes]
rs4282016	0.86[EUR][1000 genomes]
rs4303830	0.86[EUR][1000 genomes]
rs4389428	0.86[EUR][1000 genomes]
rs4493378	0.86[EUR][1000 genomes]
rs4558699	0.88[EUR][1000 genomes]
rs4568066	0.85[EUR][1000 genomes]
rs4577414	0.86[EUR][1000 genomes]
rs4678663	0.86[EUR][1000 genomes]
rs4678667	0.91[EUR][1000 genomes]
rs4678669	0.89[EUR][1000 genomes]
rs4678670	0.91[EUR][1000 genomes]
rs4678671	0.91[EUR][1000 genomes]
rs4678672	0.89[EUR][1000 genomes]
rs6550268	0.91[EUR][1000 genomes]
rs6789605	0.91[EUR][1000 genomes]
rs7428345	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7428732	0.91[EUR][1000 genomes]
rs7429467	0.86[EUR][1000 genomes]
rs7432479	0.86[EUR][1000 genomes]
rs7432860	0.86[EUR][1000 genomes]
rs7434154	0.86[EUR][1000 genomes]
rs7619405	0.86[EUR][1000 genomes]
rs7619869	0.86[EUR][1000 genomes]
rs7621054	0.94[EUR][1000 genomes]
rs7622308	0.85[EUR][1000 genomes]
rs7653775	0.83[EUR][1000 genomes]
rs9637519	0.86[EUR][1000 genomes]
rs9828031	0.86[EUR][1000 genomes]
rs9846875	0.86[EUR][1000 genomes]
rs9865471	0.86[EUR][1000 genomes]
rs9865491	0.86[EUR][1000 genomes]
rs9865700	0.96[EUR][1000 genomes]
rs9866583	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001599	chr3:34149575-34437701	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv536533	chr3:34149575-34437701	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv876682	chr3:34149814-34401451	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv916961	chr3:34203879-34506554	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1001752	chr3:34294343-34323331	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34302000-34309400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr3:34303800-34309800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:34304600-34309600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:34305200-34311600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:34306600-34309600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr3:34307000-34309600	Weak transcription	Fetal Muscle Leg	muscle
7	chr3:34307000-34309600	Weak transcription	Fetal Thymus	thymus
8	chr3:34307800-34309400	Weak transcription	Thymus	Thymus
9	chr3:34309000-34310200	Enhancers	Fetal Intestine Small	intestine
10	chr3:34309000-34310400	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr3:34309200-34309600	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr3:34309200-34310000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr3:34309200-34310000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr3:34309200-34310000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr3:34309200-34310000	Enhancers	Fetal Heart	heart
16	chr3:34309200-34310000	Enhancers	Rectal Mucosa Donor 29	rectum
17	chr3:34309200-34310200	Enhancers	Fetal Intestine Large	intestine
18	chr3:34309200-34310200	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr3:34309200-34310400	Enhancers	Primary monocytes fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links