Variant report

Variant	rs7428345
Chromosome Location	chr3:34310854-34310855
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:34306937..34309088-chr3:34310627..34313215,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PDCD6IP-2	chr3:34309814-34311242	NONHSAT088957

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12497198	0.86[EUR][1000 genomes]
rs17031491	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4282016	0.86[EUR][1000 genomes]
rs4303830	0.86[EUR][1000 genomes]
rs4389428	0.86[EUR][1000 genomes]
rs4493378	0.86[EUR][1000 genomes]
rs4558699	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4568066	0.85[EUR][1000 genomes]
rs4577414	0.86[EUR][1000 genomes]
rs4678663	0.86[EUR][1000 genomes]
rs4678667	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4678669	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4678670	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4678671	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4678672	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6550268	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6789605	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7428732	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7429467	0.86[EUR][1000 genomes]
rs7432479	0.86[EUR][1000 genomes]
rs7432860	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7434154	0.86[EUR][1000 genomes]
rs7619405	0.86[EUR][1000 genomes]
rs7619869	0.86[EUR][1000 genomes]
rs7621054	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7622308	0.85[EUR][1000 genomes]
rs7643132	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs7653775	0.83[EUR][1000 genomes]
rs9637519	0.86[EUR][1000 genomes]
rs9828031	0.86[EUR][1000 genomes]
rs9846875	0.86[EUR][1000 genomes]
rs9865471	0.86[EUR][1000 genomes]
rs9865491	0.86[EUR][1000 genomes]
rs9865700	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9866583	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001599	chr3:34149575-34437701	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv536533	chr3:34149575-34437701	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv876682	chr3:34149814-34401451	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv916961	chr3:34203879-34506554	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1001752	chr3:34294343-34323331	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34305200-34311600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:34309800-34311000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:34310600-34311000	Weak transcription	Thymus	Thymus

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