Variant report

Variant	rs7428732
Chromosome Location	chr3:34295558-34295559
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:34294305..34297993-chr3:34298599..34300564,3	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs12497198	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17031491	0.91[EUR][1000 genomes]
rs4282016	0.93[EUR][1000 genomes]
rs4303830	0.93[EUR][1000 genomes]
rs4389428	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4493378	0.93[EUR][1000 genomes]
rs4558699	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4568066	0.92[EUR][1000 genomes]
rs4577414	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4678663	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4678667	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4678669	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4678670	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4678671	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4678672	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6550268	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6769128	0.83[EUR][1000 genomes]
rs6789605	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7428345	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7429467	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7431295	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7432479	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7432860	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7434154	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7619405	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7619869	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7621054	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7622308	0.92[EUR][1000 genomes]
rs7643132	0.94[ASN][1000 genomes]
rs7653775	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9637519	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9828031	0.93[EUR][1000 genomes]
rs9846875	0.93[EUR][1000 genomes]
rs9865471	0.93[EUR][1000 genomes]
rs9865491	0.93[EUR][1000 genomes]
rs9865700	0.91[EUR][1000 genomes]
rs9866583	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9880282	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001599	chr3:34149575-34437701	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv536533	chr3:34149575-34437701	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv876682	chr3:34149814-34401451	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv916961	chr3:34203879-34506554	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1001752	chr3:34294343-34323331	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34291400-34297000	Weak transcription	Thymus	Thymus
2	chr3:34292600-34297400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:34294400-34296200	Weak transcription	Aorta	Aorta
4	chr3:34294600-34297400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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