Variant report

Variant	rs7431295
Chromosome Location	chr3:34282976-34282977
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12497198	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4282016	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4303830	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4389428	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4493378	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4558699	0.82[ASN][1000 genomes]
rs4568066	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4577414	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4678663	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4678667	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4678670	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4678671	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4678672	0.80[ASN][1000 genomes]
rs6550268	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6769128	0.83[EUR][1000 genomes]
rs6789605	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7428732	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7429467	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7432479	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7432860	0.82[ASN][1000 genomes]
rs7434154	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7619405	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7619869	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7621054	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7622308	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7643132	0.80[ASN][1000 genomes]
rs7653775	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9637519	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9828031	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9846875	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9865471	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9865491	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9866583	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9880282	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001599	chr3:34149575-34437701	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv536533	chr3:34149575-34437701	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv876682	chr3:34149814-34401451	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv916961	chr3:34203879-34506554	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34280200-34283200	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr3:34281600-34283800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:34281800-34283000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:34281800-34283200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr3:34282000-34283400	Enhancers	Thymus	Thymus
6	chr3:34282200-34283000	Enhancers	Cortex derived primary cultured neurospheres	brain

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