Variant report

Variant	rs6769128
Chromosome Location	chr3:34254333-34254334
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:34254296..34256628-chr3:34259423..34261115,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10510657	0.90[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs12497198	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4282016	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4303830	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4389428	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4493378	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4568066	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4577414	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4678663	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4678667	0.81[EUR][1000 genomes]
rs4678670	0.81[EUR][1000 genomes]
rs4678671	0.81[EUR][1000 genomes]
rs6550259	0.81[JPT][hapmap]
rs6550268	0.81[EUR][1000 genomes]
rs6763955	0.95[ASN][1000 genomes]
rs6788274	0.93[ASN][1000 genomes]
rs6789605	0.81[EUR][1000 genomes]
rs7428732	0.83[EUR][1000 genomes]
rs7429467	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7431295	0.83[EUR][1000 genomes]
rs7432479	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7434154	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7619405	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7619869	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7622308	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7653775	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9311047	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9637519	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9828031	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9846875	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9865471	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9865491	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9866583	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9880282	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001599	chr3:34149575-34437701	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv536533	chr3:34149575-34437701	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv876682	chr3:34149814-34401451	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv916961	chr3:34203879-34506554	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34244000-34255000	Weak transcription	Right Atrium	heart
2	chr3:34252600-34255400	Enhancers	HUVEC	blood vessel
3	chr3:34253200-34255200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr3:34253400-34255200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:34253400-34255400	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr3:34253400-34257200	Enhancers	Fetal Intestine Small	intestine
7	chr3:34253600-34254400	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr3:34253600-34254400	Enhancers	Fetal Muscle Leg	muscle
9	chr3:34253600-34254600	Enhancers	Duodenum Smooth Muscle	Duodenum
10	chr3:34253600-34255000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr3:34253600-34255400	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr3:34253600-34255600	Enhancers	Fetal Intestine Large	intestine
13	chr3:34253800-34254400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr3:34253800-34254800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:34253800-34255000	Weak transcription	Brain Angular Gyrus	brain
16	chr3:34254000-34254800	Enhancers	Adipose Nuclei	Adipose
17	chr3:34254000-34255000	Weak transcription	Aorta	Aorta
18	chr3:34254000-34257800	Weak transcription	Primary B cells from peripheral blood	blood
19	chr3:34254000-34258400	Weak transcription	Primary hematopoietic stem cells	blood
20	chr3:34254200-34255200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr3:34254200-34255200	Weak transcription	Stomach Mucosa	stomach
22	chr3:34254200-34257800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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