Variant report

Variant	rs4678670
Chromosome Location	chr3:34304070-34304071
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs12497198	0.91[EUR][1000 genomes]
rs17031491	0.91[EUR][1000 genomes]
rs4282016	0.91[EUR][1000 genomes]
rs4303830	0.91[EUR][1000 genomes]
rs4389428	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4493378	0.91[EUR][1000 genomes]
rs4558699	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4568066	0.90[EUR][1000 genomes]
rs4577414	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4678663	0.91[EUR][1000 genomes]
rs4678667	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4678669	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4678671	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4678672	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6550268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6769128	0.81[EUR][1000 genomes]
rs6789605	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7428345	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7428732	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7429467	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7431295	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7432479	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7432860	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7434154	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7619405	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7619869	0.91[EUR][1000 genomes]
rs7621054	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7622308	0.90[EUR][1000 genomes]
rs7643132	0.97[ASN][1000 genomes]
rs7653775	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs883057	0.81[AFR][1000 genomes]
rs9637519	0.91[EUR][1000 genomes]
rs9828031	0.91[EUR][1000 genomes]
rs9846875	0.91[EUR][1000 genomes]
rs9865471	0.91[EUR][1000 genomes]
rs9865491	0.91[EUR][1000 genomes]
rs9865700	0.93[EUR][1000 genomes]
rs9866583	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9880282	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001599	chr3:34149575-34437701	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv536533	chr3:34149575-34437701	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv876682	chr3:34149814-34401451	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv916961	chr3:34203879-34506554	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1001752	chr3:34294343-34323331	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34299200-34305400	Enhancers	Fetal Intestine Large	intestine
2	chr3:34299600-34305200	Enhancers	Fetal Thymus	thymus
3	chr3:34300600-34305000	Enhancers	Dnd41	blood
4	chr3:34300600-34305200	Enhancers	Thymus	Thymus
5	chr3:34301200-34305400	Enhancers	Fetal Brain Male	brain
6	chr3:34301600-34305800	Enhancers	Fetal Heart	heart
7	chr3:34302000-34306200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr3:34302000-34307000	Enhancers	Primary hematopoietic stem cells	blood
9	chr3:34302000-34307000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr3:34302000-34309400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr3:34302200-34305000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr3:34302400-34307800	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr3:34302600-34304200	Weak transcription	Fetal Muscle Leg	muscle
14	chr3:34302600-34304600	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr3:34302600-34304600	Enhancers	Placenta Amnion	Placenta Amnion
16	chr3:34303000-34305800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr3:34303200-34304400	Enhancers	GM12878-XiMat	blood
18	chr3:34303200-34305800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr3:34303400-34304600	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr3:34303400-34305400	Enhancers	Fetal Intestine Small	intestine
21	chr3:34303600-34304200	Enhancers	Aorta	Aorta
22	chr3:34303600-34304800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr3:34303600-34305200	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr3:34303800-34304200	Weak transcription	Fetal Lung	lung
25	chr3:34303800-34304400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr3:34303800-34304800	Enhancers	Rectal Mucosa Donor 29	rectum
27	chr3:34303800-34305200	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr3:34303800-34305800	Enhancers	Fetal Brain Female	brain
29	chr3:34303800-34309800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr3:34304000-34304200	Enhancers	Brain Cingulate Gyrus	brain
31	chr3:34304000-34304400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr3:34304000-34305200	Enhancers	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links