Variant report

Variant	rs17056184
Chromosome Location	chr9:73649920-73649921
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10512011	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17056169	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17056185	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17056215	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17056295	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4338175	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56287878	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59612871	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60222070	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73647946	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73647947	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042806	chr9:73613885-73686104	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73641600-73652600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:73643800-73684000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr9:73647600-73651000	Weak transcription	Brain Substantia Nigra	brain
4	chr9:73648200-73651200	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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