Variant report

Variant	rs56287878
Chromosome Location	chr9:73733246-73733247
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10512011	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17056169	0.91[ASN][1000 genomes]
rs17056184	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17056185	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17056215	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17056295	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4338175	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59612871	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60222070	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73647946	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73647947	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7859140	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035505	chr9:73709852-73934353	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73720400-73735200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:73728000-73736000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr9:73728400-73734600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:73730000-73733400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr9:73730000-73733600	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr9:73730200-73734200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr9:73730800-73733800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:73730800-73736200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr9:73731200-73734600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr9:73731200-73734600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr9:73731400-73734200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr9:73731800-73734600	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr9:73732400-73735000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr9:73732800-73734400	Enhancers	H1 Cell Line	embryonic stem cell
15	chr9:73732800-73737800	Active TSS	Fetal Brain Female	brain
16	chr9:73733000-73735600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
17	chr9:73733200-73733600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr9:73733200-73733600	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr9:73733200-73735000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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