Variant report

Variant	rs73647947
Chromosome Location	chr9:73735946-73735947
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10512011	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17056169	0.91[ASN][1000 genomes]
rs17056184	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17056185	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17056215	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17056295	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4338175	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56287878	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59612871	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60222070	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73647946	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7859140	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035505	chr9:73709852-73934353	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73728000-73736000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:73730800-73736200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr9:73732800-73737800	Active TSS	Fetal Brain Female	brain
4	chr9:73733800-73737000	Active TSS	Fetal Brain Male	brain
5	chr9:73734400-73737200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:73734600-73736800	Active TSS	Brain Angular Gyrus	brain
7	chr9:73734600-73737200	Active TSS	Brain Anterior Caudate	brain
8	chr9:73734600-73737600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr9:73734800-73736000	Active TSS	Brain Hippocampus Middle	brain
10	chr9:73734800-73736800	Active TSS	H1 Cell Line	embryonic stem cell
11	chr9:73734800-73736800	Active TSS	Brain Substantia Nigra	brain
12	chr9:73734800-73737800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:73735000-73737000	Active TSS	HUES6 Cell Line	embryonic stem cell
14	chr9:73735000-73737200	Active TSS	ES-I3 Cell Line	embryonic stem cell
15	chr9:73735000-73737400	Active TSS	H9 Cell Line	embryonic stem cell
16	chr9:73735200-73736000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr9:73735200-73737000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr9:73735200-73737200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr9:73735200-73737200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
20	chr9:73735400-73736000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr9:73735400-73737200	Active TSS	HUES48 Cell Line	embryonic stem cell
22	chr9:73735400-73738000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr9:73735600-73736000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
24	chr9:73735600-73736600	Bivalent Enhancer	Fetal Heart	heart
25	chr9:73735600-73736800	Active TSS	HUES64 Cell Line	embryonic stem cell
26	chr9:73735600-73737000	Active TSS	iPS-18 Cell Line	embryonic stem cell
27	chr9:73735600-73737200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr9:73735600-73737200	Active TSS	iPS-15b Cell Line	embryonic stem cell
29	chr9:73735600-73737200	Active TSS	iPS-20b Cell Line	embryonic stem cell
30	chr9:73735800-73736000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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